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Submissions from 2020

Identification and characterization of Colletotrichum species causing apple bitter rot in New York and description of C. noveboracense sp. nov, Fatemeh Khodadadi, Jonathan B. González, Phillip L. Martin, Emily Giroux, Guillaume J. Bilodeau, Kari A. Peter, Vinson P. Doyle, and Srđan G. Aćimović

Identifying Atypical Modes Of Continuous Trait Evolution, T K. King and J M. Brown

Genome-wide screening identifies novel genes implicated in cellular sensitivity to BRAF expression, Tengyu Ko, Rahul Sharma, and Shisheng Li

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The central role of taxonomy in the study of neotropical biodiversity1, Laura P. Lagomarsino and Laura A. Frost

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The case for re-examining glycosylation inhibitors, mimetics, primers and glycosylation decoys as antivirals and anti-inflammatories in covid19, Roger A. Laine

Pyrrolocin C and equisetin inhibit bacterial acetyl-CoA carboxylase, Erica C. Larson, Albebson L. Lim, Christopher D. Pond, Matthew Craft, Mirela Čavužić, Grover L. Waldrop, Eric W. Schmidt, and Louis R. Barrows

Pyrrolocin C and equisetin inhibit bacterial acetyl-CoA carboxylase, Erica C. Larson, Albebson L. Lim, Christopher D. Pond, Matthew Craft, Mirela Čavužić, Grover L. Waldrop, Eric W. Schmidt, and Louis R. Barrows

Glucocorticoid negative feedback as a potential mediator of trade-offs between reproduction and survival, Christine R. Lattin and Tosha R. Kelly

A novel group 6 LEA protein from diapause embryos of Artemia franciscana is cytoplasmically localized, Blase M. LeBlanc and Steven C. Hand

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Erratum: The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education (BioScience DOI: 10.1093/biosci/biz140, James Lendemer, Barbara Thiers, Anna K. Monfils, Jennifer Zaspel, Elizabeth R. Ellwood, Andrew Bentley, Katherine Levan, John Bates, David Jennings, Dori Contreras, et al.

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The Extended Specimen Network: A Strategy to Enhance US Biodiversity Collections, Promote Research and Education, James Lendemer, Barbara Thiers, Anna K. Monfils, Jennifer Zaspel, Elizabeth R. Ellwood, Andrew Bentley, Katherine Levan, John Bates, David Jennings, Dori Contreras, et al.

Genomic analysis for virulence determinants in feline herpesvirus type-1 isolates, Andrew C. Lewin, Lyndon M. Coghill, Gillian J. McLellan, Ellison Bentley, and Konstantin G. Kousoulas

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The role of functional strategies in global plant distribution, Huixuan Liao, Daijiang Li, Ting Zhou, Bei Huang, Haijie Zhang, Baoming Chen, and Shaolin Peng

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phyr: Anrpackage for phylogenetic species-distribution modelling in ecological communities, Daijiang Li, Russell Dinnage, Lucas A. Nell, Matthew R. Helmus, and Anthony Ives

Changes in taxonomic and phylogenetic diversity in the Anthropocene, Daijiang Li, Julian D. Olden, Julie L. Lockwood, Sydne Record, Michael L. McKinney, and Benjamin Baiser

Opening the door to greater phylogeographic inference in Southeast Asia: Comparative genomic study of five codistributed rainforest bird species using target capture and historical DNA, Haw Chuan Lim, Subir B. Shakya, Michael G. Harvey, Robert G. Moyle, Robert C. Fleischer, Michael J. Braun, and Frederick H. Sheldon

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A One-Shot Learning Framework for Assessment of Fibrillar Collagen from Second Harmonic Generation Images of an Infarcted Myocardium, Qun Liu, Supratik Mukhopadhyay, Maria Ximena Bastidas Rodriguez, Xing Fu, Sushant Sahu, David Burk, and Manas Gartia

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The first complete mitochondrial genomes of sawtail surgeonfishes (Acanthuridae: Prionurus), William B. Ludt, Luiz A. Rocha, and Prosanta Chakrabarty

Supplemental Material for Maharjan, McKowen, and Hart, 2020, Mukesh Maharjan, J. Keller McKowen, and Craig Hart

Supplemental Material for Maharjan, McKowen, and Hart, 2020, Mukesh Maharjan, J. Keller McKowen, and Craig Hart

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Overlapping but distinct sequences play roles in the insulator and promoter activities of the drosophila BEAF-dependent scs⇔ insulator, Mukesh Maharjan, J. Keller McKowen, and Craig M. Hart

A simple index to quantify and compare the magnitude of intraspecific geographic plumage colour variation in typical antbirds (Aves: Passeriformes: Thamnophilidae), Rafael S. Marcondes and Robb T. Brumfield

Testing the simple and complex versions of Gloger’s rule in the Variable Antshrike (Thamnophilus caerulescens, Thamnophilidae), Rafael S. Marcondes, Katherine Faust Stryjewski, and Robb T. Brumfield

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A Simple Index To Quantify And Compare The Magnitude Of Intraspecific Geographic Plumage Colour Variation In Typical Antbirds (Aves: Passeriformes: Thamnophilidae), R S. Marcondes and R T. Brumfield

Testing The Simple And Complex Versions Of Gloger'S Rule In The Variable Antshrike (Thamnophilus Caerulescens, Thamnophilidae), R S. Marcondes, K F. Stryjewski, and R T. Brumfield

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Distribution of aromatase in the brain of the African cichlid fish Astatotilapia burtoni: Aromatase expression, but not estrogen receptors, varies with female reproductive-state, Karen P. Maruska, Julie M. Butler, Chase Anselmo, and Ganga Tandukar

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Neural Activation Patterns Associated with Maternal Mouthbrooding and Energetic State in an African Cichlid Fish, Karen P. Maruska, Julie M. Butler, Karen E. Field, Christopher Forester, and Ashley Augustus

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De Novo assembly of a high-quality reference genome for the horned lark (Eremophila alpestris), Nicholas A. Mason, Paulo Pulgarin, Carlos Daniel Cadena, and Irby J. Lovette

A novel screening approach comparing kinase activity of small molecule inhibitors with similar molecular structures and distinct biologic effects in triple-negative breast cancer to identify targetable signaling pathways, Margarite D. Matossian, Hope E. Burks, Steven Elliott, Van T. Hoang, William J. Zuercher, Carrow Wells, David H. Drewry, and Nirav Kapadia

Patient-Derived Xenografts as an Innovative Surrogate Tumor Model for the Investigation of Health Disparities in Triple Negative Breast Cancer, Margarite D. Matossian, Alexandra A. Giardina, Maryl K. Wright, Steven Elliott, Michelle M. Loch, Khoa Nguyen, Arnold H. Zea, and Frank H. Lau

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Fire as a fundamental ecological process: Research advances and frontiers, Kendra K. McLauchlan, Philip E. Higuera, Jessica Miesel, Brendan M. Rogers, Jennifer Schweitzer, Jacquelyn K. Shuman, Alan J. Tepley, J. Morgan Varner, Thomas T. Veblen, Solny A. Adalsteinsson, et al.

Divergence, gene flow, and speciation in eight lineages of trans‐Beringian birds, Jessica F. McLaughlin, Brant C. Faircloth, Travis C. Glenn, and Kevin Winker

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Climate change models predict decreases in the range of a microendemic freshwater fish in Honduras, Caleb D. McMahan, César E. Fuentes-Montejo, Luke Ginger, Juan Carlos Carrasco, Prosanta Chakrabarty, and Wilfredo A. Matamoros

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Plant genome size influences stress tolerance of invasive and native plants via plasticity, Laura A. Meyerson, Petr Pyšek, Magdalena Lučanová, Sara Wigginton, Cao Tri Tran, and James T. Cronin

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Environmentally clean access to Antarctic subglacial aquatic environments, Alexander B. Michaud, Trista (Vick-Majors, Amanda M. Achberger, Mark L. Skidmore, Brent C. Christner, Martyn Tranter, and John C. Priscu

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Bromodomain and Extraterminal Inhibition by JQ1 Produces Divergent Transcriptional Regulation of Suppressors of Cytokine Signaling Genes in Adipocytes, Paula Mota de Sá, Allison J. Richard, and Jacqueline M. Stephens

The anti-HIV drug nelfinavir mesylate (Viracept) is a potent inhibitor of cell fusion caused by the SARSCoV-2 spike (S) glycoprotein warranting further evaluation as an antiviral against COVID-19 infections, Farhana Musarrat, Vladimir Chouljenko, Achyut Dahal, Rafiq Nabi, Tamara Chouljenko, Seetharama D. Jois, and Konstantin G. Kousoulas

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Halobacterium bonnevillei sp. Nov., halobaculum saliterrae sp. nov. and halovenus carboxidivorans sp. nov., three novel carbon monoxide-oxidizing halobacteria from saline crusts and soils, Marisa R. Myers and G. M. King

Intramuscular vaccination of mice with the human herpes simplex virus type-1(HSV-1) VC2 vaccine, but not its parental strain HSV-1(F) confers full protection against lethal ocular HSV-1 (McKrae) pathogenesis, Shan K. Naidu, Rafiq Nabi, Nagarjuna R. Cheemarla, Brent A. Stanfield, Paul J. Rider, Nithya Jambunathan, Vladimir N. Chouljenko, and Renee Carter

A New Species Of Cyrtodactylus Gray (Gekkonidae: Squamata) From Manus Island, And Extended Description And Range Extension For Cyrtodactylus Sermowaiensis (De Rooij), P M. Oliver, R Hartman, C D. Turner, T A. Wilde, P M. Oliver, and S J. Richards

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Complement in reproductive white adipose tissue characterizes the obese preeclamptic-like BPH/5 mouse prior to and during pregnancy, Kelsey N. Olson, Dorien Reijnders, Viviane C.L. Gomes, R. Caitlin Hebert, Chin Chi Liu, Jacqueline M. Stephens, Leanne M. Redman, Nataki C. Douglas, and Jennifer L. Sones

A tale of two transcriptomic responses in agricultural pests via host defenses and viral replication, Pramod Pantha, Subbaiah Chalivendra, Dong-Ha Oh, Bret Elderd, and Maheshi Dassanayake

A tale of two transcriptomic responses in agricultural pests via host defenses and viral replication, Pramod Pantha, Subbaiah Chalivendra, Dong-Ha Oh, Bret Elderd, and Maheshi Dassanayake

Living with Salt, Pramod Pantha and Maheshi Dassanayake

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Structure, function, and regulation of the essential virulence factor capsular polysaccharide of vibrio vulnificus, Gregg S. Pettis and Aheli S. Mukerji

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A Role for Oncostatin M in the Impairment of Glucose Homeostasis in Obesity, Irene Piquer-Garcia, Laura Campderros, Siri D. Taxerås, Aleix Gavaldà-Navarro, Rosario Pardo, María Vila, Silvia Pellitero, Eva Martínez, Jordi Tarascó, Pau Moreno, et al.

ALPACA: a fast and accurate approach for automated landmarking of three-dimensional biological structures, Arthur Porto

SlicerMorph: An open and extensible platform to retrieve, visualize and analyze 3D morphology, Arthur Porto

ML‐morph: A fast, accurate and general approach for automated detection and landmarking of biological structures in images, Arthur Porto and Kjetil L. Voje

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Water lily (Nymphaea thermarum) genome reveals variable genomic signatures of ancient vascular cambium losses, Rebecca A. Povilus, Jeffrey M. DaCosta, Christopher Grassa, Prasad R.V. Satyaki, Morgan Moeglein, Johan Jaenisch, Zhenxiang Xi, Sarah Mathews, Mary Gehring, Charles C. Davis, et al.

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Speciation-by-depth on coral reefs: Sympatric divergence with gene flow or cryptic transient isolation?, Carlos Prada and Michael E. Hellberg

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Speciation-by-depth on coral reefs: Sympatric divergence with gene flow or cryptic transient isolation?, Carlos Prada and Michael E. Hellberg

Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships, Arun N. Prasanna, Daniel Gerber, Teeratas Kijpornyongpan, M Catherine Aime, Vinson P. Doyle, and Laszlo G. Nagy

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Geographic patterns and environmental correlates of phylogenetic relatedness and diversity for freshwater fish assemblages in North America, Hong Qian, Yong Cao, Daijiang Li, Cindy Chu, Brody Sandel, and Xianli Wang

Palaeoclimate ocean conditions shaped the evolution of corals and their skeletons through deep time, Andrea M. Quattrini, Estefanía Rodríguez, Brant C. Faircloth, Peter F. Cowman, Mercer R. Brugler, Gabriela A. Farfan, Michael E. Hellberg, and Marcelo V. Kitahara

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Reducing host DNA contamination in 16S rRNA gene surveys of anthozoan microbiomes using PNA clamps, Alicia M. Reigel, Sarah M. Owens, and Michael E. Hellberg

A New Species Of New Guinea Worm-Eating Snake (Elapidae: Toxicocalamus Boulenger, 1896), With Comments On Postfrontal Bone Variation Based On Micro-Computed Tomography, J R. Roberts and C C. Austin

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Extensive paraphyly in the typical owl family (Strigidae), Jessie F. Salter, Carl H. Oliveros, Peter A. Hosner, Joseph D. Manthey, Mark B. Robbins, Robert G. Moyle, Robb T. Brumfield, and Brant C. Faircloth

Adipocyte Oncostatin Receptor Regulates Adipose Tissue Homeostasis and Inflammation, David Sanchez-Infantes and Jacqueline M. Stephens

Histone H4 LRS mutations can attenuate UV mutagenesis without affecting PCNA ubiquitination or sumoylation, Kathiresan Selvam, Sheikh Arafatur Rahman, Derek Forrester, Adam Bao, Michael Lieu, and Shisheng Li

Investigating The Utility Of Traditional And Genomic Multi-Locus Datasets To Resolve Relationships In Lipaugus And Tijuca (Cotingidae), A E. Settlecowski, A M. Cuervo, J G. Tello, M G. Harvey, A E. Settlecowski, and E P. Derryberry

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A note on species richness and the variance of epidemic severity, Peter Shaffery, Bret D. Elderd, and Vanja Dukic

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BionoiNet: Ligand-binding site classification with off-the-shelf deep neural network, Wentao Shi, Jeffrey M. Lemoine, Abd El Monsif A. Shawky, Manali Singha, Limeng Pu, Shuangyan Yang, J. Ramanujam, and Michal Brylinski

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Respiratory syncytial virus disease severity is associated with distinct CD8+ T-cell profiles, David T. Siefker, Luan Vu, Dahui You, Andrew McBride, Ryleigh Taylor, Tamekia L. Jones, John DeVincenzo, and Stephania A. Cormier

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Global gene flow releases invasive plants from environmental constraints on genetic diversity, Annabel L. Smith, Trevor R. Hodkinson, Jesus Villellas, Jane A. Catford, Anna Mária Csergő, Simone P. Blomberg, Elizabeth E. Crone, Johan Ehrlén, Maria B. Garcia, Anna Liisa Laine, et al.

Development of Anncaliia algerae (Microsporidia) in Drosophila melanogaster, Yuliya Y. Sokolova, Earl Weidner, and Patrick J. DiMario

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Improving natural product research translation: From source to clinical trial, Barbara C. Sorkin, Adam J. Kuszak, Gregory Bloss, Naomi K. Fukagawa, Freddie Ann Hoffman, Mahtab Jafari, Bruce Barrett, Paula N. Brown, Frederic D. Bushman, Steven J. Casper, et al.

Sensitivity Of The Polydetect Computational Pipeline For Phylogenetic Analyses, J M. Storer, J A. Walker, V E. Jordan, M A. Batzer, and J M. Storer

A Novel Mutation of the Gene Adversely Affects Plant Architecture in Rice ( L.), Prasanta K. Subudhi, Richard S. Garcia, Sapphire Coronejo, and Teresa B. De Leon

Comparative Transcriptomics of Rice Genotypes with Contrasting Responses to Nitrogen Stress Reveals Genes Influencing Nitrogen Uptake through the Regulation of Root Architecture, Prasanta K. Subudhi, Richard S. Garcia, Sapphire Coronejo, and Ronald Tapia

Divergence in a stress regulatory network underlies differential growth control, Ying Sun, Dong-Ha Oh, Lina Duan, Prashanth Ramachandran, Andrea Ramirez, Anna Bartlett, Maheshi Dassanayake, and José R. Dinneny

The Other Side Of The Sahulian Coin: Biogeography And Evolution Of Melanesian Forest Dragons (Agamidae), O J. Tallowin, S Meiri, S C. Donnellan, S J. Richards, O J. Tallowin, and P M. Oliver

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Advances in the neurophysiology of magnocellular neuroendocrine cells, Jeffrey G. Tasker, Masha Prager-Khoutorsky, Ryoichi Teruyama, José R. Lemos, and William E. Amstrong

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Exploring the FMN binding site in the mitochondrial outer membrane protein mitoNEET, Homyra Tasnim, Aaron P. Landry, Chelsey R. Fontenot, and Huangen Ding

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Sixty-first Supplement to the American Ornithological Society's Check-list of North American Birds, R. Terry Chesser, Shawn M. Billerman, Kevin J. Burns, Carla Cicero, Jon L. Dunn, Andrew W. Kratter, Irby J. Lovette, Nicholas A. Mason, Pamela C. Rasmussen, J. V. Remsen, et al.

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Impaired purine homeostasis plays a primary role in trimethoprim-mediated induction of virulence genes in Burkholderia thailandensis, Sudarshan S. Thapa and Anne Grove

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The effect of summer drought on the predictability of local extinctions in a butterfly metapopulation, Erik van Bergen, Tad Dallas, Michelle F. DiLeo, Aapo Kahilainen, Anniina L.K. Mattila, Miska Luoto, and Marjo Saastamoinen

Optimal markers for the identification of Colletotrichum species, Willie Anderson Vieira, Priscila Alves Bezerra, Anthony Carlos Silva, Josiene Silva Veloso, Marcos Paz Câmara, and Vinson Patrick Doyle

Revisiting a Landmark Study System: No Evidence for a Punctuated Mode of Evolution in Metrarabdotos., Kjetil Lysne Voje, Emanuela Di Martino, and Arthur Porto

Cross species multi-omics reveals cell wall sequestration and elevated global transcription as mechanisms of boron tolerance in plants, Guannan Wang, Sandra Feuer DiTusa, Dong-Ha Oh, Achim D. Herrmann, David G. Mendoza-Cozatl, Malcolm A. O’Neill, Aaron P. Smith, and Maheshi Dassanayake

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GOMCL: a t GOMCL: a toolkit t oolkit to cluster o cluster, evaluate, and extr aluate, and extract non-r act non-redundant edundant associations of Gene Ontology-based functions, Guannan Wang, Dong-Ha Oh, and Maheshi Dassanayake

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The CDK Inhibitor SIAMESE Targets Both CDKA;1 and CDKB1 Complexes to Establish Endoreplication in Trichomes1[OPEN], Kai Wang, Ruth W. Ndathe, Narender Kumar, Elizabeth A. Zeringue, Naohiro Kato, and John C. Larkin

Using museum pelt collections to generate pollen prints from high-risk regions: A new palynological forensic strategy for geolocation, Sophie Warny, Shannon Ferguson, Mark S. Hafner, and Gilles Escarguel

Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility, Wesley C. Warren, R Alan Harris, Marina Haukness, Ian T. Fiddes, Shwetha C. Murali, Jason Fernandes, Philip C. Dishuck, Jessica M. Storer, Muthuswamy Raveendran, LaDeana W. Hillier, et al.

Microsporidia Can Acquire Lamin-like Intermediate Filaments and Cell Adhesion Catenin-cadherin Complexes from the Host (?), Earl Weidner, Yuliya Y. Sokolova, and Robin M. Overstreet

Remediation of crude oil-contaminated coastal marsh soil: Integrated effect of biochar, rhamnolipid biosurfactant and nitrogen application, Zhuo Wei, Jim J. Wang, Lewis A. Gaston, Jifeng Li, Lisa M. Fultz, Ronald D. DeLaune, and Syam K. Dodla

Targeting EGFR Overexpression at the Surface of Colorectal Cancer Cells by Exploiting Amidated BODIPY-Peptide Conjugates, Tyrslai M. Williams, Zehua Zhou, Sitanshu S. Singh, Martha Sibrian-Vazquez, Seetharama D. Jois, and Maria da Henriques Vicente

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Mice without a microbiome are partially protected from lung injury by hyperoxia, Kent A. Willis, Joseph F. Pierre, Stephania A. Cormier, and Ajay J. Talati

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Perinatal maternal antibiotic exposure augments lung injury in offspring in experimental bronchopulmonary dysplasia, Kent A. Willis, David T. Siefker, Michael M. Aziz, Catrina T. White, Naiha Mussarat, Charles K. Gomes, Amandeep Bajwa, Joseph F. Pierre, Stephania A. Cormier, and Ajay J. Talati

Native and Introduced Trypanosome Parasites in Endemic and Introduced Murine Rodents of Sulawesi, Monique L. Winterhoff, Anang S. Achmadi, Emily J. Roycroft, Heru Handika, Rizaldi Trias Putra, Karen M. Rowe, Susan L. Perkins, and Kevin C. Rowe

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Correction to: Microbial communities associated with distance- and density-dependent seedling mortality in a tropical rainforest (Plant Ecology, (2020), 221, 1, (41-54), 10.1007/s11258-019-00989-y), J. L. Wood, P. T. Green, J. J. Vido, C. Celestina, K. E. Harms, and A. E. Franks

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Understanding the biogeochemical impacts of fish farms using a benthic-pelagic model, Evgeniy V. Yakushev, Philip Wallhead, Paul E. Renaud, Alisa Ilinskaya, Elizaveta Protsenko, Shamil Yakubov, Svetlana Pakhomova, Andrew K. Sweetman, Kathy Dunlop, Anfisa Berezina, et al.

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The Nbp35/ApbC homolog acts as a nonessential [4Fe-4S] transfer protein in methanogenic archaea, Cuiping Zhao, Zhe Lyu, Feng Long, Taiwo Akinyemi, Kasidet Manakongtreecheep, Dieter Söll, William B. Whitman, David J. Vinyard, and Yuchen Liu

Submissions from 2019

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Virulence-driven trade-offs in disease transmission: A meta-analysis*, Miguel A. Acevedo, Forrest P. Dillemuth, Andrew J. Flick, Matthew J. Faldyn, and Bret D. Elderd

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Calculations with graded perverse-coherent sheaves, Pramod N. Achar and William D. Hardesty

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ON THE HUMPHREYS CONJECTURE ON SUPPORT VARIETIES OF TILTING MODULES, Pramod N. Achar, William Hardesty, and Simon Riche

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Maternal childhood and lifetime traumatic life events and infant bronchiolitis, Margaret A. Adgent, Omar Elsayed-Ali, Tebeb Gebretsadik, Frances A. Tylavsky, Mehmet Kocak, Stephania A. Cormier, Rosalind J. Wright, and Kecia N. Carroll

Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting, Fernando Alda, Victor A. Tagliacollo, Maxwell J. Bernt, Brandon T. Waltz, William B. Ludt, Brant C. Faircloth, Michael E. Alfaro, and James S. Albert

Mood and quality of life changes in pregnancy and postpartum and the effect of a behavioral intervention targeting excess gestational weight gain in women with overweight and obesity: a parallel-arm randomized controlled pilot trial, Abby D. Altazan, Leanne M. Redman, Jeffrey H. Burton, Robbie A. Beyl, Loren E. Cain, Elizabeth F. Sutton, and Corby K. Martin

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements, Tobias Andermann, Alexandre M. Fernandes, Urban Olsson, Mats Töpel, Bernard Pfeil, Bengt Oxelman, Alexandre Aleixo, and Brant C. Faircloth