Submissions from 2009
An efficient and economic asymmetric synthesis of (+)-nootkatone, tetrahydronootkatone, and derivatives, Anne M. Sauer, William E. Crowe, Gregg Henderson, and Roger A. Laine
Tetranucleotide markers from the loggerhead sea turtle (Caretta caretta) and their cross-amplification in other marine turtle species, Brian M. Shamblin, Brant C. Faircloth, Mark G. Dodd, Dean A. Bagley, Llewellyn M. Ehrhart, Peter H. Dutton, Amy Frey, and Campbell J. Nairn
Effects of phenanthrene- and metal-contaminated sediment on the feeding activity of the Harpacticoid Copepod, Schizopera knabeni, Soraya J. Silva, Kevin R. Carman, John W. Fleeger, Tonya Marshall, and Sidney J. Marlborough
The continuity of protein structure space is an intrinsic property of proteins, Jeffrey Skolnick, Adrian K. Arakaki, Yup Lee Seung, and Michal Brylinski
FINDSITE: A combined evolution/structure-based approach to protein function prediction, Jeffrey Skolnick and Michal Brylinski
Reply to Zimmerman et al.: The space of single domain protein structures is continuous and highly connected, Jeffrey Skolnick, Michal Brylinski, and Seung Yup Lee
Internal priming: An opportunistic pathway for L1 and Alu retrotransposition in hominins, Deepa Srikanta, Shurjo K. Sen, Erin M. Conlin, and Mark A. Batzer
An alternative pathway for Alu retrotransposition suggests a role in DNA double-strand break repair, Deepa Srikanta, Shurjo K. Sen, Charles T. Huang, Erin M. Conlin, Ryan M. Rhodes, and Mark A. Batzer
Flow cytometric and immunohistochemical detection of in vivo BrdU-labeled cells in mouse fat depots, Jaroslaw Staszkiewicz, Jeffrey Gimble, Courtney Cain, Marilyn Dietrich, David Burk, Heather Kirk-Ballard, and Barbara Gawronska-Kozak
IscA/SufA paralogues are required for the [4Fe-4S] cluster assembly in enzymes of multiple physiological pathways in Escherichia coli under aerobic growth conditions, Guoqiang Tan, Jianxin Lu, Jacob P. Bitoun, Hao Huang, and Huangen Ding
Kinetic mechanism and structural requirements of the amine-catalyzed decarboxylation of oxaloacetic acid, Nabil K. Thalji, William E. Crowe, and Grover L. Waldrop
Acute nicotine exposure and modulation of a spinal motor circuit in embryonic zebrafish, Latoya T. Thomas, Lillian Welsh, Fernando Galvez, and Kurt R. Svoboda
A qualitative approach to enzyme inhibition, Grover L. Waldrop
Smaller is better for antibiotic discovery, Grover L. Waldrop
Growth-regulated expression of a bacteriocin, produced by the sweet potato pathogen streptomyces ipomoeae, that exhibits interstrain inhibition, Jing Wang, Kevin L. Schultyp, and Gregg S. Pettis
Modulation of lung inflammation by vessel dilator in a mouse model of allergic asthma, Xiaoqin Wang, Weidong Xu, Xiaoyuan Kong, Dongqing Chen, Gary Hellermann, Terry A. Ahlert, Joseph D. Giaimo, Stephania A. Cormier, Xu Li, Richard F. Lockey, et al.
Water stress impacts on bacterial carbon monoxide oxidation on recent volcanic deposits, Carolyn F. Weber and Gary M. King
Alu repeats increase local recombination rates, David J. Witherspoon, W. Scott Watkins, Yuhua Zhang, Jinchuan Xing, Whitney L. Tolpinrud, Dale J. Hedges, Mark A. Batzer, and Lynn B. Jorde
Coordination of ribosomal protein and ribosomal RNA gene expression in response to TOR signaling, Li Juan Xiao and Anne Grove
Mobile elements create structural variation: Analysis of a complete human genome, Jinchuan Xing, Yuhua Zhang, Kyudong Han, Abdel Halim Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, et al.
The PsbP protein, but not the PsbQ protein, is required for normal thylakoid architecture in Arabidopsis thaliana, Xiaoping Yi, Stefan R. Hargett, Laurie K. Frankel, and Terry M. Bricker
The effect of marker choice on estimated levels of introgression across an avian (Pipridae: Manacus) hybrid zone, Tamaki Yuri, Robert W. Jernigan, Robb T. Brumfield, Nirmal K. Bhagabati, and Michael J. Braun
Alternative mRNA splicing produces a novel biologically active short isoform of PGC-1α, Yubin Zhang, Peter Huypens, Aaron W. Adamson, Ji Suk Chang, Tara M. Henagan, Anik Boudreau, Natalie R. Lenard, David Burk, Johannes Klein, Nina Perwitz, et al.
The Structure of a Receptor with Two Associating Transmembrane Domains on the Cell Surface: Integrin αIIbβ3, Jieqing Zhu, Bing Hao Luo, Patrick Barth, Jack Schonbrun, David Baker, and Timothy A. Springer
Submissions from 2008
Springer correspondences for dihedral groups, P. N. Achar and A. M. Aubert
On rank 2 complex reflection groups, Pramod N. Achar and Anne Marie Aubert
Représentations de Springer pour les groupes de réflexions complexes imprimitifs, Pramod N. Achar and Anne Marie Aubert
Orbit closures in the enhanced nilpotent cone, Pramod N. Achar and Anthony Henderson
On special pieces, the Springer correspondence, and unipotent characters, Pramod N. Achar and Daniel S. Sage
ANYL 338-Combustion generated nanoparticles: Pro-inflammatory effects and role of oxidative stress in neonatal rat exposure models, S. Balakrishna, B. Fahmy, S. Lomnicki, B. Dellinger, T. Ahlert, D. You, and S. A. Cormier
Diversification in the neotropics: Phylogenetic patterns and historical processes, John M. Bates, Carlos Daniel Cadena, Jose G. Tello, and Robb T. Brumfield
Identification of a functionally essential amino acid for Arabidopsis cyclic nucleotide gated ion channels using the chimeric AtCNGC11/12 gene, Joyce Baxter, Wolfgang Moeder, William Urquhart, Dea Shahinas, Kimberley Chin, Dinesh Christendat, Hong Gu Kang, Magdalena Angelova, Naohiro Kato, and Keiko Yoshioka
The Sinorhizobium meliloti MsbA2 protein is essential for the legume symbiosis, Sebastian Beck, Victoria L. Marlow, Katy Woodall, William T. Doerrler, Euan K. James, and Gail P. Ferguson
Brassicaceae phylogeny inferred from phytochrome A and ndhF sequence data: Tribes and trichomes revisited, Mark A. Beilstein, Ihsan A. Al-Shehbaz, Sarah Mathews, and Elizabeth A. Kellogg
DNA inhibits catalysis by the carboxyltransferase subunit of acetyl-CoA carboxylase: Implications for active site communication, Brian K. Benson, Glen Meades, Anne Grove, and Grover L. Waldrop
Escherichia coli FtnA acts as an iron buffer for re-assembly of iron-sulfur clusters in response to hydrogen peroxide stress, Jacob P. Bitoun, Genfu Wu, and Huangen Ding
Collpas: Activity hotspots for frugivorous bats (Phyllostomidae) in the Peruvian Amazon, Adriana Bravo, Kyle E. Harms, Richard D. Stevens, and Louise H. Emmons
The psbo1 mutant of Arabidopsis cannot efficiently use calcium in support of oxygen evolution by photosystem II, Terry M. Bricker and Laurie K. Frankel
Constitutive Expressor of Pathogenesis-Related Genes5 affects cell wall biogenesis and trichome development, Ginger Brininstool, Remmy Kasili, L. Alice Simmons, Viktor Kirik, Martin Hülskamp, and John C. Larkin
Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data, Robb T. Brumfield, Liang Liu, David E. Lum, and Scott V. Edwards
A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation, Michal Brylinski and Jeffrey Skolnick
Q-dock: Low-resolution flexible ligand docking with pocket-specific threading restraints, Michal Brylinski and Jeffrey Skolnick
Description of four novel psychrophilic, ionizing radiation-sensitive Deinococcus species from alpine environments, Ryan P. Callegan, M Fernanda Nobre, Patrick M. McTernan, John R. Battista, Rafael Navarro-González, Christopher P. McKay, Milton S. da Costa, and Fred A. Rainey
Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings, Matt D. Carling and Robb T. Brumfield
Haldane's rule in an avian system: Using cline theory and divergence population genetics to test for differential introgression of mitochondrial, autosomal, and sex-linked loci across the Passerina bunting hybrid zone, Matthew D. Carling and Robb T. Brumfield
Diagnoses for Leiognathus Lacepède 1802, Equula Cuvier 1815, Equulites Fowler 1904, Eubleekeria Fowler 1904, and a New Ponyfish Genus (Teleostei: Leiognathidae), Prosanta Chakrabarty and John S. Sparks
Transcriptomic variation and plasticity in rufous-collared sparrows (Zonotrichia capensis) along an altitudinal gradient, Zachary A. Cheviron, Andrew Whitehead, and Robb T. Brumfield
Imprinting of an evolutionarily conserved antisense transcript gene APeg3, Jung Ha Choo, Jeong Do Kim, and Joomyeong Kim
Administering plasmid DNA encoding tumor vessel-anchored IFN-α for localizing gene product within or into tumors, Ryan Craig, Jeffry Cutrera, Shiguo Zhu, Xueqing Xia, Yong Hwan Lee, and Shulin Li
Stand structure and dynamics of sand pine differ between the Florida panhandle and peninsula, Paul B. Drewa, William J. Platt, Charles Kwit, and Thomas W. Doyle
Hydrology, habitat change and population demography: an individual-based model for the endangered Cape Sable seaside sparrow Ammodramus maritimus mirabilis, B. D. Elderd and M. Philip Nott
Host-pathogen interactions, insect outbreaks, and natural selection for disease Resistance, Bret D. Elderd, Jonathan Dushoff, and Greg Dwyer
BEAF regulates cell-cycle genes through the controlled deposition of H3K9 methylation marks into its conserved dual-core binding sites., Eldon Emberly, Roxane Blattes, Bernd Schuettengruber, Magali Hennion, Nan Jiang, Craig M. Hart, Emmanuel Käs, and Olivier Cuvier
Assessment of Pulmonary Toxicity Associated With the Exposure to Metal Oxide Nanoparticles In-Vitro: Copper Oxide Induces Oxidative Stress and a Pro-Inflammatory Response in Human Epithelial Cells, B. Fahmy, S. Balakrishna, and S. Cormier
MSATCOMMANDER: Detection of microsatellite repeat arrays and automated, locus-specific primer design, B.C. Faircloth
Toll-like receptor 2 recognition of the microsporidia Encephalitozoon spp. induces nuclear translocation of NF-κB and subsequent inflammatory responses, Jeffrey Fischer, Colby Suire, and Hollie Hale-Donze
Kinetics of Encephalitozoon spp. infection of human macrophages, Jeffrey Fischer, Diana Tran, Richard Juneau, and Hollie Hale-Donze
Temperature and vegetation effects on soil organic carbon quality along a forested mean annual temperature gradient in North America, Cinzia Fissore, Christian P. Giardina, Randall K. Kolka, Carl C. Trettin, Gary M. King, Martin F. Jurgensen, Christopher D. Barton, and S. Douglas Mcdowell
Multiple disturbances accelerate clonal growth in a potentially monodominant bamboo, Paul R. Gagnon and William J. Platt
Reproductive and seedling ecology of a semelparous native bamboo (Arundinaria gigantea, poaceae), Paul R. Gagnon and William J. Platt
Introduction to the special issue on glycobiology and sphingobiology, Carl G. Gahmberg and Roger A. Laine
A matter of potential concern: Natural organic matter alters the electrical properties of fish gills, Fernando Galvez, Andrew Donini, Richard C. Playle, D. Scott Smith, Michael J. O'Donnell, and Chris M. Wood
Cultured trout gill epithelia enriched in pavement cells or in mitochondria-rich cells provides insights into Na+ and Ca 2+ transport, Fernando Galvez, Tommy Tsui, and Chris M. Wood
A covalent linker allows for membrane targeting of an oxylipin biosynthetic complex, Nathaniel C. Gilbert, Marc Niebuhr, Hiro Tsuruta, Tee Bordelon, Oswin Ridderbusch, Adam Dassey, Alan R. Brash, Sue G. Bartlett, and Marcia E. Newcomer
Effect of epigenetic modifications of donor somatic cells on the subsequent chromatin remodeling of cloned bovine embryos, Angelica M. Giraldo, Darin A. Hylan, Casey B. Ballard, Megan N. Purpera, Todd D. Vaught, John W. Lynn, Robert A. Godke, and Kenneth R. Bondioli
Further characterization of Vibrio vulnificus rugose variants and identification of a capsular and rugose exopolysaccharide gene cluster, Brenda L. Grau, Margaret C. Henk, Katherine L. Garrison, Brett J. Olivier, Randall M. Schulz, Kathy L. O'Reilly, and Gregg S. Pettis
Bias in population growth rate estimation: Sparse data, partial life cycle analysis and Jensen's inequality, Jason S. Grear and Bret D. Elderd
Neuroprotection via matrix-trophic coupling between cerebral endothelial cells and neurons, Shuzhen Guo, Woo Jean Kim, Josephine Lok, Sun Ryung Lee, Elaine Besancon, Bing Hao Luo, Monique F. Stins, Xiaoying Wang, Shoukat Dedhar, and Eng H. Lo
Identification of repeat structure in large genomes using repeat probability clouds, Wanjun Gu, Todd A. Castoe, Dale J. Hedges, Mark A. Batzer, and David D. Pollock
Clutch size in the tropical scincid lizard Emoia sanfordi, a species endemic to the Vanuatu archipelago, Alison Madeline Hamilton, Mallory Elizabeth Eckstut, Elaine Renee Klein, and Christopher Cowell Austin
Mitochondria in energy-limited states: Mechanisms that blunt the signaling of cell death, Steven C. Hand and Michael A. Menze
L1 recombination-associated deletions generate human genomic variation, Kyudong Han, Jungnam Lee, Thomas J. Meyer, Paul Remedios, Lindsey Goodwin, and Mark A. Batzer
Caspase-mediated degradation of PPARγ proteins in adipocytes, Fang He, Julie A. Doucet, and Jacqueline M. Stephens
Desiccation kinetics and biothermodynamics of glass forming trehalose solutions in thin films, Xiaoming He, Alex Fowler, Michael Menze, Steve Hand, and Mehmet Toner
Classification and the Status of Wild Populations of Parrots, Dominique G. Homberger
Herpes simplex virus type-1(HSV-1) oncolytic and highly fusogenic mutants carrying the NV1020 genomic deletion effectively inhibit primary and metastatic tumors in mice, Anna Israyelyan, Vladimir N. Chouljenko, Abolghasem Baghian, Andrew T. David, Michael T. Kearney, and Konstantin G. Kousoulas
Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106, Marc J. Jakoby, Doris Falkenhan, Michael T. Mader, Ginger Brininstool, Elisabeth Wischnitzki, Nicole Platz, Andrew Hudson, Martin Hülskamp, John Larkin, and Arp Schnittger
Multiple nutrients limit litterfall and decomposition in a tropical forest, Michael Kaspari, Milton N. Garcia, Kyle E. Harms, Mirna Santana, S. Joseph Wright, and Joseph B. Yavitt
Multidimensional fluorescence microscopy of multiple organelles in Arabidopsis seedlings, Naohiro Kato, Dexter Reynolds, Matthew L. Brown, Marietta Boisdore, Yukichi Fujikawa, Andrea Morales, and Lee A. Meisel
Application of photothermal deflection spectroscopy for the determination of iron(II) with ferrozine with sorption preconcentration on Silufol, A. D. Khrycheva, D. A. Nedosekin, M. Yu Kononets, M. A. Proskurnin, S. V. Pakhomova, W. Faubel, and S. Heissler
Photothermal deflection determination of iron(II) with ferrozine with sorption preconcentration on silufol plates, A. D. Khrycheva, D. A. Nedosekin, M. A. Proskurnin, M. Y. Kononets, S. V. Pakhomova, and W. Faubel
Cu/Zn superoxide dismutases in developing cotton fibers: Evidence for an extracellular form, Hee Jin Kim, Naohiro Kato, Sunran Kim, and Barbara Triplett
Two evolutionarily conserved sequence elements for Peg3/Usp29 transcription, Jeong Do Kim, Sungryul Yu, Jung Ha Choo, and Joomyeong Kim
Multiple YY1 and CTCF binding sites in imprinting control regions, Joomyeong Kim
In vivo YY1 knockdown effects on genomic imprinting, Joomyeong Kim and Jeong Do Kim
Distribution of atmospheric methane oxidation and methanotrophic communities on hawaiian volcanic deposits and soils, Gary M. King and Kenji Nanba
Interactions between bacterial carbon monoxide and hydrogen consumption and plant development on recent volcanic deposits, Gary M. King and Carolyn F. Weber
Atmospheric CO and hydrogen uptake and CO oxidizer phylogeny for miyake-jima, Japan volcanic deposits, Gary M. King, Carolyn F. Weber, Kenji Nanba, Yoshinori Sato, and Hiroyuki Ohta
Identification of Adropin as a Secreted Factor Linking Dietary Macronutrient Intake with Energy Homeostasis and Lipid Metabolism, K. Ganesh Kumar, James L. Trevaskis, Daniel D. Lam, Gregory M. Sutton, Robert A. Koza, Vladimir N. Chouljenko, Konstantin G. Kousoulas, Pamela M. Rogers, Robert A. Kesterson, Marie Thearle, et al.
Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons, Jungnam Lee, Kyudong Han, Thomas J. Meyer, Heui Soo Kim, and Mark A. Batzer
Phylogeny, taxonomy, and evolution of Neotropical cichlids (Teleostei: Cichlidae: Cichlinae), Wm Leo Smith, Prosanta Chakrabarty, and John S. Sparks
Applications of Fluorescence Anisotropy to the Study of Protein-DNA Interactions, Vince J. LiCata and Andy J. Wowor
Codivergence in heteromyid rodents (Rodentia: heteromyidae) and their sucking lice of the genus Fahrenholzia (Phthiraptera: anoplura), Jessica E. Light and Mark S. Hafner
Prevalence of temperature-dependent heat capacity changes in protein-DNA interactions, Chin Chi Liu, Allison J. Richard, Kausiki Datta, and Vince J. LiCata
Estimating species trees using multiple-allele DNA sequence data, Liang Liu, Dennis K. Pearl, Robb T. Brumfield, and Scott V. Edwards
Complementary roles of SufA and IscA in the biogenesis of iron-sulfur clusters in Escherichia coli, Jianxin Lu, Juanjuan Yang, Guoqiang Tan, and Huangen Ding
Phylogenetic relationships of B-related phytochromes in the Brassicaceae: Redundancy and the persistence of phytochrome D, Sarah Mathews and Kim McBreen
The C-terminal domain of HU-related histone-like protein Hlp from Mycobacterium smegmatis mediates DNA end-joining, Anirban Mukherjee, Gargi Bhattacharyya, and Anne Grove
DNA protection by histone-like protein HU from the hyperthermophilic eubacterium Thermotoga maritima, Anirban Mukherjee, Abimbola O. Sokunbi, and Anne Grove
Post-allergen challenge inhibition of poly(ADP-ribose) polymerase harbors therapeutic potential for treatment of allergic airway inflammation, A. S. Naura, C. P. Hans, M. Zerfaoui, D. You, S. A. Cormier, M. Oumouna, and A. H. Boulares