Alu insertion polymorphisms in NW Africa and the Iberian Peninsula: Evidence for a strong genetic boundary through the Gibraltar Straits

David Comas, Universitat Pompeu Fabra Barcelona
Francesc Calafell, Universitat Pompeu Fabra Barcelona
Noufissa Benchemsi, Ibn Sina Hospital, Agdal Rabat
Ahmed Helal, Université de Monastir, Faculté de Pharmacie de Monastir
Gerard Lefranc, IGH Institut de Génétique Humaine
Mark Stoneking, Max Planck Institute for Evolutionary Anthropology
Mark A. Batzer, LSUHSC School of Medicine
Jaume Bertranpetit, Universitat Pompeu Fabra Barcelona
Antti Sajantila, Helsingin Yliopisto

Abstract

An analysis of 11 Alu insertion polymorphisms (ACE, TPA25, PV92, APO, FXIIIB, D1, A25, B65, HS2.43, HS3.23, and HS4.65) has been performed in several NW African (Northern, Western, and Southeastern Moroccans; Saharawi; Algerians; Tunisians) and Iberian (Basques, Catalans, and Andalusians) populations. Genetic distances and principal component analyses show a clear differentiation of NW African and Iberian groups of samples, suggesting a strong genetic barrier matching the geographical Mediterranean Sea barrier. The restriction to gene flow may be attributed to the navigational hazards across the Straits, but cultural factors must also have played a role. Some degree of gene flow from sub-Saharan Africa can be detected in the southern part of North Africa and in Sahawari and Southeastern Moroccans, as a result of a continuous gene flow across the Sahara desert that has created a south-north cline of sub-Saharan Africa influence in North Africa. Iberian samples show a substantial degree of homogeneity and fall within the cluster of European-based genetic diversity.